Resource,Source,Identifier
Trimmomatic,http://www.usadellab.org/cms/index.php?page=trimmomatic,RRID:SCR_011848
SAMTOOLS,http://htslib.org/,RRID:SCR_002105
SAMtools/BCFtools,http://samtools.sourceforge.net/mpileup.shtml,RRID:SCR_005227
SnpEff,http://snpeff.sourceforge.net/,RRID:SCR_005191
NCBI Sequence Read Archive (SRA),http://www.ncbi.nlm.nih.gov/sra,RRID:SCR_004891