Resource,Source,Identifier Galaxy,http://galaxyproject.org/,RRID:SCR_006281 Thermo Fisher Qubit fluorimeter,https://www.thermofisher.com/us/en/home/industrial/spectroscopy-elemental-isotope-analysis/molecular,RRID:SCR_018095 SAMTOOLS,http://htslib.org/,RRID:SCR_002105 SAMBLASTER,https://github.com/GregoryFaust/samblaster,RRID:SCR_000468 BEDTools,https://github.com/arq5x/bedtools2,RRID:SCR_006646 ggplot2,https://cran.r-project.org/web/packages/ggplot2/index.html,RRID:SCR_014601 ComplexHeatmap,https://bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html,RRID:SCR_017270 pheatmap,https://www.rdocumentation.org/packages/pheatmap/versions/0.2/topics/pheatmap,RRID:SCR_016418 SciPy,http://www.scipy.org/,RRID:SCR_008058 scikit-learn,http://scikit-learn.org/,RRID:SCR_002577